Tourist yacht in turquoise water below Kicker Rock with prickly pear cactus, Galapagos

Cheap hotels in Galápagos Islands

The Galápagos Islands are famous for their fearless wildlife. Besides cruises, travelers can stay in hotels on Santa Cruz, San Cristóbal or Isabela and take day trips to other islands.

Looking for cheap hotels in Galápagos Islands? RoomsCheap compares hotel deals from the biggest booking sites in one search, so you can find cheap rooms in the right neighborhood — not just the lowest price in the wrong one.

The Galápagos can be explored by expedition cruise or from hotels on the inhabited islands with day trips by boat.

Where to find cheap rooms in Galápagos Islands

Puerto Ayora (Santa Cruz)

The largest town, home of the Charles Darwin Research Station.

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Puerto Baquerizo Moreno (San Cristóbal)

The islands’ capital, with sea lions on the waterfront.

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Puerto Villamil (Isabela)

A quieter town on the largest island, with beaches and volcanoes.

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Map of cheap hotels in Galápagos Islands

Zoom and pan the map to compare hotel prices by neighborhood; rates come live from the booking sites.

Photos of Galápagos Islands

When to book a cheap hotel in Galápagos Islands

December–May is warmer with calmer seas; June–November is cooler and drier with richer marine life.

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Frequently asked questions

Cruise or land-based trip?

Cruises reach more remote islands; land-based stays are often cheaper and more flexible.

Are there fees to enter the Galápagos?

Yes: a national park entrance fee paid on arrival plus a transit control card bought at the mainland airport.

Which island is best to stay on?

Santa Cruz is the most central for day trips; San Cristóbal and Isabela are quieter.